[referencer] Problem with "Manage Bibtex File" feature
Jamie O'Sullivan
josulliv at lsw.uni-heidelberg.de
Sat Nov 1 09:57:37 EDT 2008
Sorry, that output was from 1.0.4. Here's the output from 1.1.5.
int main(int, char**):
setting pythonPath
to :/home/josulliv/Work/Visualisation/Local_Vis:./plugins:/home/josulliv/.referencer/plugins:/usr/local/lib/referencer:
void PluginManager::scan(const std::string&):
found module pubmed
virtual void PythonPlugin::load(const std::string&):
No actions in
successfully loaded pubmed
void PluginManager::scan(const std::string&):
found module lyx
virtual void PythonPlugin::load(const std::string&):
no metadata capabilities in lyx
Glib::ustring PluginManager::findDataFile(Glib::ustring):
Trying /usr/local/lib/referencer/lyx.png
virtual void PythonPlugin::load(const std::string&):
successfully loaded lyx
Preferences::Preferences():
disabling plugin crossref
std::pair<Glib::ustring, int> Preferences::getListSort():
Got column 'title'
DocumentView::DocumentView(RefWindow&, Library&, bool):
Initialising sort column to title
void DocumentView::onSortColumnChanged():
Activated action for column name title
bool Library::load(const Glib::ustring&):
Reading XML...
Done, got 67 docs
Glib::RefPtr<Gdk::Pixbuf> ThumbnailGenerator::lookupThumb(const
Glib::ustring&):
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Jet%20Simulations/Moraghan%20et%20al%202006%20MNRAS.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Jet%20Simulations/Moraghan%20et%20al%202006%20MNRAS.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Observations%20-%20Molecular%20jets/Garcia%20Lopez%20et%20al%202008%20A&A.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Observations%20-%20Molecular%20jets/Garcia%20Lopez%20et%20al%202008%20A&A.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Blondin%20et%20al%201990ApJ.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Blondin%20et%20al%201990ApJ.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Bromm%20et%20al%20ApJ%202002.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Bromm%20et%20al%20ApJ%202002.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/cen%201992%20ApJS.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/cen%201992%20ApJS.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Draine%20%26%20McKee%201993ARA%2BA.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Draine%20%26%20McKee%201993ARA%2BA.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Glover%20%26%20Abel%202008%20arxiv.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Glover%20%26%20Abel%202008%20arxiv.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Hollenbach%20%26%20McKee%201979ApJS.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Hollenbach%20%26%20McKee%201979ApJS.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Kirk%20H%2C%20Johnstone%2C%20Tafalla%202007ApJ.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Kirk%20H%2C%20Johnstone%2C%20Tafalla%202007ApJ.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Martin%20Schwarz%20Mandy%201996ApJ.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Martin%20Schwarz%20Mandy%201996ApJ.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/O'Connell%20et%20al%202005%20A%26A.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/O'Connell%20et%20al%202005%20A%26A.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/O'Sullivan%20%26%20Ray%202000%20A%26A.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/O'Sullivan%20%26%20Ray%202000%20A%26A.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Rosen%20%26%20Smith2003MNRAS.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Rosen%20%26%20Smith2003MNRAS.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Shapiro%20%26%20Kang%201987ApJ.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Shapiro%20%26%20Kang%201987ApJ.pdf'
Couldn't find
thumbnail:'file:///home/josulliv/Work/Documents/Referencer_libs/Sternberg%20%26%20Dalgarno%201989ApJ.pdf'
Has valid failed
thumbnail: 'file:///home/josulliv/Work/Documents/Referencer_libs/Sternberg%20%26%20Dalgarno%201989ApJ.pdf'
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_filter_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_sort_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_filter_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_sort_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_filter_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_sort_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_filter_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_sort_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_filter_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_sort_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_filter_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_sort_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_filter_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_sort_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_filter_real_unref_node:
assertion `elt->ref_count > 0' failed
(referencer:21777): Gtk-CRITICAL **: gtk_tree_model_sort_real_unref_node:
assertion `elt->ref_count > 0' failed
void RefWindow::run():
entering main loop
void RefWindow::onManageBibtex():
Got bibtextarget = Thesis%20Bibtex%2Fthesis.bib
Got absolute path =
Got relative path = Thesis Bibtex/thesis.bib
newtarget: Thesis%20Bibtex%2Fthesis.bib
bool Library::save(const Glib::ustring&):
file:///home/josulliv/Work/Documents/Thesis%20Bibliography/Thesis%20Bibliography.reflib
~
file:///home/josulliv/Work/Documents/Thesis%20Bibliography/Thesis%20Bibliography.reflib.save-tmp
Updating relative filenames...
void Document::updateRelFileName(const Glib::ustring&):
Set refilename_ 'Sternberg%201989ESASP.pdf'
Set refilename_ 'Flower%20%26%20Roueff%20JPhys%201998.pdf'
Set refilename_ 'suttner%20el%20al%201997A%26A.pdf'
Set refilename_ 'Flower%20et%20al%201989%20JPhysB.pdf'
Set refilename_ 'Hollenbach%20%26%20McKee%201979ApJS.pdf'
Set refilename_ 'Rosen%20%26%20Smith2003MNRAS.pdf'
Set refilename_ 'draine%20et%20al%201983%20ApJ.pdf'
Set refilename_ 'Mandy%20et%20al%201993ApJS.pdf'
Set refilename_ 'Yoshida%20et%20al%202006%20ApJ.pdf'
Set refilename_ 'Turner%20et%20al%201977ApJS.pdf'
Set refilename_ 'rosen%20%26%20smith%202004%20A%26A.pdf'
Set refilename_ 'Shapiro%20%26%20Kang%201987ApJ.pdf'
Set refilename_ 'O'Connell%20et%20al%202005%20A%26A.pdf'
Set refilename_ 'Martin%20Schwarz%20Mandy%201996ApJ.pdf'
Set refilename_ 'walmesley%20et%20al%202004%20A%26A.pdf'
Set refilename_ 'Lepp%20%26%20Shull%201983ApJ.pdf'
Set refilename_ 'yoshida%202007%20arxiv'
Set refilename_ 'Hartigan%20et%20al%201994%20ApJ.pdf'
Set refilename_ 'Le%20Bourlot%20et%20al%202002MNRAS.pdf'
Set refilename_ 'le%20bourlot%20et%20al%201999%20MNRAS.pdf'
Set refilename_ 'cen%201992%20ApJS.pdf'
Set refilename_ 'Blondin%20et%20al%201990ApJ.pdf'
Set refilename_ 'Flower%20et%20al%202007%20JPhysB.pdf'
Set refilename_ 'raga%20et%20al%202002%20A%26A.pdf'
Set refilename_ 'Shull%20%26%20Beckwith%201982%20annurev.aa.pdf'
Set refilename_ 'Schwartz%201975ApJ.pdf'
Set refilename_ 'Brand%20et%20al%201988ApJ.pdf'
Set refilename_ 'Smith%20%26%20Rosen%202003MNRAS.pdf'
Set refilename_ 'Glover%20%26%20Abel%202008%20arxiv.pdf'
Set refilename_ 'suttner%20el%20al%201997IAUS.pdf'
Set refilename_ 'Raga%20et%20al%202004%20ApJSS.pdf'
Set refilename_ 'le%20bourlot%20de%20forets%20flower%202000.pdf'
Set refilename_ 'Raga%20et%20al%201995A%26A.pdf'
Set refilename_ 'Flower%20et%20al%202003%20MNRAS.pdf'
Set refilename_ 'Glover%202003%20ApJ.pdf'
Set refilename_ 'Voelker%20et%20al%201999%20A%26A.pdf'
Set refilename_ 'Tine%20et%20al%201997%20ApJ.pdf'
Set refilename_ 'O'Sullivan%20%26%20Ray%202000%20A%26A.pdf'
Set refilename_ 'raga%20et%20al%202003%20RMAA.pdf'
Set refilename_ 'de%20gouveia%20dal%20pino%202005%20ASR.pdf'
Set refilename_ 'Flower%20et%20al%201986%20MNRAS'
Set refilename_ 'Draine%20%26%20McKee%201993ARA%2BA.pdf'
Set refilename_ 'Zinnecker%20et%20al%201997IAUS.pdf'
Set refilename_ 'Omukai%20et%20al%202000%20ApJ.pdf'
Set refilename_ 'Anninos%20et%20al%201997%20New%20Astronomy.pdf'
Set refilename_ 'Lee%20et%20al%20arxiv%202008.pdf'
Set refilename_ 'Lee%20et%20al%202007%20ApJ.pdf'
Set refilename_ 'Sternberg%20%26%20Dalgarno%201989ApJ.pdf'
Set refilename_ 'Smith%20et%20al%202007%20A%26A.pdf'
Set refilename_ 'raga%20et%20al%202004%20RMAA.pdf'
Set refilename_ 'raga%20et%20al%202000%20RMAA.pdf'
Set refilename_ 'Biro%20et%20al%201995MNRAS.pdf'
Set refilename_ 'Flower%20%26%20Roueff%201998%20JPhysB.pdf'
Set refilename_ 'Bromm%20et%20al%20ApJ%202002.pdf'
Set refilename_ 'nomura%20%26%20millar%202005%20A%26A.pdf'
Set refilename_ 'Smith%20et%20al%201997A%26A.pdf'
Set refilename_ 'Kirk%20H%2C%20Johnstone%2C%20Tafalla%202007ApJ.pdf'
Set refilename_ 'Flower%20et%20al%202000MNRAS.pdf'
Set refilename_ 'Galli%20%26%20Palla%20A%26A%201998.pdf'
Set refilename_ 'Glover%20%26%20MacLow%202007%20ApJ.pdf'
Set refilename_ 'Chang%20%26%20Martin%201991ApJ.pdf'
Set refilename_ 'rate06.pdf'
Set refilename_ 'Abel%20et%20al%20New%20Astronomy%201997.pdf'
Set refilename_ 'Moraghan%20et%20al%202006%20MNRAS.pdf'
Set refilename_ 'eisloeffel%2097'
Set refilename_ 'Garcia%20Lopez%20et%20al%202008%20A&A.pdf'
Set
refilename_ 'McCaughrean%20et%20al%201994%20molecular%20jet%20observations.pdf'
bool Library::save(const Glib::ustring&):
Done.
Generating XML...
Done.
Writing bibtex, manage_target_ = Thesis%20Bibtex%2Fthesis.bib
bibtextarget =
file:///home/josulliv/Work/Documents/Thesis%20Bibliography/Thesis%20Bibtex%2Fthesis.bib
void Library::writeBibtex(const Glib::ustring&, const std::vector<Document*,
std::allocator<Document*> >&, bool, bool):
file:///home/josulliv/Work/Documents/Thesis%20Bibliography/Thesis%20Bibtex%2Fthesis.bib
~
file:///home/josulliv/Work/Documents/Thesis%20Bibliography/Thesis%20Bibtex%2Fthesis.bib.export-tmp
exception in create Invalid URI
bool Library::save(const Glib::ustring&):
Done.
On Friday 31 October 2008 19:34:34 John Spray wrote:
> That output doesn't appear to come from referencer 1.1.5, "TagWindow"
> hasn't existed for several versions.
>
> John
>
> ---
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